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ABOUT THIS RECORD

ID: MNEST048461
species: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1162

Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTGTAGTAGTTTAGCCCTGC

miRNA*
CGGCCTAAATTACTACAACACG

mismatches: 2
bulges: 0

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pre-miRNA
GCGGGGCCCTGACACCACTGCGGCCGCCGGCCTAAATTACTACAACACGCCGCGCCTGGACCCGAGGGAGGACCCCTCGGGACCCGGTACGTCGTGTTGT
AGTAGTTTAGCCCTGC
GGTCGCGGTGGGGTCAGGTCCTTCCGC


dot-bracket secondary structure
((((((.((((((.(((((((((((((.((.((((((((((((((((((.((..((.((.((((((((.....)))))))).)).))..)).))))))))
)))))))))).)).))
))))))))))).)))))).))..))))



SIMILARITIES
miRBase cre-MIR1162: 2e-77

PMRD cre-miR1162: 2e-77

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"




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