ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1167
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGTGTGATGATTTGAAAC miRNA* ATCATGCATCGTTACACCCCCC mismatches: 3 bulges: 2 |
pre-miRNA
GAGCATCATGCATCGTTACACCCCCCACCGTGCACCTTCACGCTCATGCGCAGCACTGTGCATGCTTGGGGTGTGATGATTTGAAACTT
dot-bracket secondary structure
(((..(((...(((((((((((((....((((......))))..((((((((....))))))))...))))))))))))).)))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
GAGCATCATGCATCGTTACACCCCCCACCGTGCACCTTCACGCTCATGCGCAGCACTGTGCATGCTTGGGGTGTGATGATTTGAAACTT
dot-bracket secondary structure
(((..(((...(((((((((((((....((((......))))..((((((((....))))))))...))))))))))))).)))..)))
SIMILARITIES| miRBase cre-MIR1167: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1167 from miRBase (MNEST039364) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
