ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1169
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGATGTTGCTTGCTGGAT miRNA* CCAGCAAGCAACATCCACATA mismatches: 0 bulges: 0 |
pre-miRNA
TACGGTATCCAGCAAGCAACATCCACATAAGCCGGGGTTGGTAGCAACACATCTACCAACCCCGGCTTATGTGGATGTTGCTTGCTGGATACCGTG
dot-bracket secondary structure
((((((((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
TACGGTATCCAGCAAGCAACATCCACATAAGCCGGGGTTGGTAGCAACACATCTACCAACCCCGGCTTATGTGGATGTTGCTTGCTGGATACCGTG
dot-bracket secondary structure
((((((((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase cre-MIR1169: 1e-49 PMRD cre-miR1169: 1e-49 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
