ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR396
source: PMRD, original name: far-miR396
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
AGATCGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGCGCGCGTGCGCGTTCATGGTTCAAGAAAGTCCTTGGAAAACATGCCCGCCTCT
dot-bracket secondary structure
(((..((((.((((...((((..((((((((((((((((((((.((((....)))).))))))))))))))))))))..))))...)))).)))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
AGATCGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGCGCGCGTGCGCGTTCATGGTTCAAGAAAGTCCTTGGAAAACATGCCCGCCTCT
dot-bracket secondary structure
(((..((((.((((...((((..((((((((((((((((((((.((((....)))).))))))))))))))))))))..))))...)))).)))).)))
SIMILARITIES| miRBase far-MIR396: 2e-23 PMRD hvu-miR396: 5e-18 microPC miR396: 3e-16 | UniProt no hits RFAM MIR396: 0.00000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
