ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR156
source: PMRD, original name: ghr-miR156a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACCCTCTATCTGTCATC mismatches: 1 bulges: 1 |
pre-miRNA
AAGGGAGGTGACAGAAGAGAGTGAGCACACAGGGTACTTTCTTGCATGCTTGAGCCTTTCATGCTTGAAGCTCTGCGTGCTCACCCTCTATCTGTCATCC
ACTT
dot-bracket secondary structure
.(((..(((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).))))))))).
.)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
AAGGGAGGTGACAGAAGAGAGTGAGCACACAGGGTACTTTCTTGCATGCTTGAGCCTTTCATGCTTGAAGCTCTGCGTGCTCACCCTCTATCTGTCATCC
ACTT
dot-bracket secondary structure
.(((..(((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).))))))))).
.)))
SIMILARITIES| miRBase ghr-MIR156a: 2e-54 PMRD ghr-miR156b: 9e-51 microPC miR156: 0.000000000005 | UniProt no hits RFAM mir-156: 1e-16 |
Identical with: ghr-MIR156a from miRBase (MNEST041042) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
