ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR166
source: PMRD, original name: ghr-miR166a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGACCGGGG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCCCATTTTTGT
AATGGATTAAGGTTGTACTAGTTTCGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((.((((.((.(((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........
)))))))))..)...))).))).)).)))).))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCCCATTTTTGT
AATGGATTAAGGTTGTACTAGTTTCGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((.((((.((.(((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....)))))))..........
)))))))))..)...))).))).)).)))).))))))..))))))))
SIMILARITIES| miRBase ghr-MIR166b: 1e-72 PMRD ghr-miR166b: 1e-72 microPC miR166: 2e-71 | UniProt no hits RFAM mir-166: 0.000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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