ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR166
source: PMRD, original name: ghr-miR166b
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGACCGGGG mismatches: 3 bulges: 0 |
pre-miRNA
TGAGGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTT
TGTAATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
((.((((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....))))))).......
...)))))))))..)...))).)))))).)))).))))))..)))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
TGAGGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCTTATTTT
TGTAATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAA
dot-bracket secondary structure
((.((((((((..((((((.((((.((((((.(((.(..(((((((((......(((((((.(((((.((....)).)))))....))))))).......
...)))))))))..)...))).)))))).)))).))))))..)))))))).)).
SIMILARITIES| miRBase ghr-MIR166b: 5e-84 PMRD ghr-miR166a: 1e-72 microPC miR166: 1e-78 | UniProt no hits RFAM mir-166: 0.0000000002 |
Identical with: ghr-MIR166b from miRBase (MNEST041048) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
