ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR171
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATTGAGCCGCGCCAATATC miRNA* TGTTGGTGAGGTTCAATCCGA mismatches: 2 bulges: 0 |
pre-miRNA
GATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))
SIMILARITIES| miRBase tcc-MIR171c: 6e-36 PMRD ptc-miRf10509-akr: 3e-19 microPC miR171: 4e-43 | UniProt no hits RFAM MIR171_1: 2e-23 |
Identical with: miR171 from microPC (MNEST046236) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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