ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR390
source: PMRD, original name: ghr-miR390c
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
AGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCT
GAGTTTCATCGGTT
dot-bracket secondary structure
..((((.((.((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))
)))))).)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
AGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCT
GAGTTTCATCGGTT
dot-bracket secondary structure
..((((.((.((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))
)))))).)).))))
SIMILARITIES| miRBase ghr-MIR390c: 3e-60 PMRD ghr-miR390b: 3e-60 microPC miR390: 4e-50 | UniProt no hits RFAM MIR390: 0.0000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
