ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR393
source: PMRD, original name: ghr-miR393
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATCT miRNA* ATCATGCGATCCCTTCGGA mismatches: 1 bulges: 1 |
pre-miRNA
TCCAAAGGGATCGCATTGATCTAATGTTGATGATGGGCTTCCTTGAAAACCTTAACGAATTAATTATTGATTTTTGTTGATTCAGTTCAGTACCCATTGG
ATCATGCGATCCCTTCGGA
dot-bracket secondary structure
(((.((((((((((((.(((((((((....(((.((..(((...)))..)).....((((((((...........))))))))...))).....))))))
))))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
TCCAAAGGGATCGCATTGATCTAATGTTGATGATGGGCTTCCTTGAAAACCTTAACGAATTAATTATTGATTTTTGTTGATTCAGTTCAGTACCCATTGG
ATCATGCGATCCCTTCGGA
dot-bracket secondary structure
(((.((((((((((((.(((((((((....(((.((..(((...)))..)).....((((((((...........))))))))...))).....))))))
))))))))))))))).)))
SIMILARITIES| miRBase ghr-MIR393: 3e-63 PMRD ptc-miR393d: 0.00000009 microPC miR393: 0.00000009 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
