ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR394
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGCGGCCAGTATGTCAA mismatches: 4 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTAGCCAACTTATAAAATGATTTGTCTTTGAAGTAATGGAGGCGGCCAGTATGTCAA
dot-bracket secondary structure
.((((((.(((.((.(((((((.....((((((.........((.(((.((((...)))).))).))..))))))))))))).)).))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTAGCCAACTTATAAAATGATTTGTCTTTGAAGTAATGGAGGCGGCCAGTATGTCAA
dot-bracket secondary structure
.((((((.(((.((.(((((((.....((((((.........((.(((.((((...)))).))).))..))))))))))))).)).))).)))))).
SIMILARITIES| miRBase ghr-MIR394b: 8e-48 PMRD vvi-miR394c: 0.00002 microPC miR394: 8e-48 | UniProt no hits RFAM MIR394: 0.00008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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