ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR395a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAGTGTTTGGGGGAACTT miRNA* TTTTCCTCGAACAACTGTAACG mismatches: 4 bulges: 1 |
pre-miRNA
CTTTTTCCTCGAACAACTGTAACGGAACGGGTGAGACGGAGAAGGGAAAGGTGGTGTCCATTTGAAGCGAAATCGGATCATCCGCAATGGAGGATTTAGT
AAAACCCAGGGACAGACCCGATTTAGTATGAAATAAATCCATTGAAACCCTAAAAGGGAAATTTTTTGAAGTGTTTGGGGGAACTT
dot-bracket secondary structure
...((((((((((((.((.(((..((.(((((((..(((.........((((((...)))))).........)))..)))))))(((((((..((((.((
(.......(((.....))).......))).))))...)))))))...(((.....)))...))..))).))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CTTTTTCCTCGAACAACTGTAACGGAACGGGTGAGACGGAGAAGGGAAAGGTGGTGTCCATTTGAAGCGAAATCGGATCATCCGCAATGGAGGATTTAGT
AAAACCCAGGGACAGACCCGATTTAGTATGAAATAAATCCATTGAAACCCTAAAAGGGAAATTTTTTGAAGTGTTTGGGGGAACTT
dot-bracket secondary structure
...((((((((((((.((.(((..((.(((((((..(((.........((((((...)))))).........)))..)))))))(((((((..((((.((
(.......(((.....))).......))).))))...)))))))...(((.....)))...))..))).))))))))))))))...
SIMILARITIES| miRBase zma-MIR395o: 0.0006 PMRD sbi-miR395e: 0.0006 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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