ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR395c
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAAAGTGTTTAGGGGAACTC miRNA* GTTCCCCTGACCACTTCATTG mismatches: 3 bulges: 0 |
pre-miRNA
GAGTTCCCCTGACCACTTCATTGGGGATATATTAAAAACCTTAACTGAGGAAATTTTTTCCTACTAAAGTGTTTAGGGGAACTC
dot-bracket secondary structure
((((((((((((.(((((.(.((((((...(((.....((((....)))).)))...)))))).).))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGTTCCCCTGACCACTTCATTGGGGATATATTAAAAACCTTAACTGAGGAAATTTTTTCCTACTAAAGTGTTTAGGGGAACTC
dot-bracket secondary structure
((((((((((((.(((((.(.((((((...(((.....((((....)))).)))...)))))).).))))).))))))))))))
SIMILARITIES| miRBase vvi-MIR395d: 0.000000004 PMRD vvi-miR395d: 0.000000004 microPC no hits | UniProt no hits RFAM mir-395: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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