ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR396
source: PMRD, original name: ghr-miR396a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACGG miRNA* GTTGTGAAGTGTTTGTGATTT mismatches: 5 bulges: 2 |
pre-miRNA
ATGTTGTGAAGTGTTTGTGATTTGTGATCATTGTTGTTGATGTTGATATTGGAGTGGTTTGGCAATTCCACAGGCTTTCTTGAACGG
dot-bracket secondary structure
.((((..((((.(((((((..(((((((((((.(((((......))))..).)))))))..))))...)))))))))))...)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
ATGTTGTGAAGTGTTTGTGATTTGTGATCATTGTTGTTGATGTTGATATTGGAGTGGTTTGGCAATTCCACAGGCTTTCTTGAACGG
dot-bracket secondary structure
.((((..((((.(((((((..(((((((((((.(((((......))))..).)))))))..))))...)))))))))))...)))).
SIMILARITIES| miRBase osa-MIR396g: 0.000004 PMRD osa-miR396g: 0.000004 microPC miR396: 0.001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
