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ABOUT THIS RECORD
ID:
MNEST048508
species:
Gossypium hirsutum
miRNA family:
MIR396
source:
PMRD, original name:
ghr-miR396c
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACTG
CAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTTGTTGCG
GTTC
AATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((((
((((...(((((.((.((....)).......(((..((...))..)))............)).))))).))))))
))))
)).))))))))))))
SIMILARITIES
miRBase
ghr-MIR396b
:
7e-61
PMRD
ghr-miR396b
:
1e-53
microPC
miR396
:
7e-61
UniProt
no hits
RFAM
MIR396: 0.0000004
Identical with:
miR396
from microPC (
MNEST045646
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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