ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR398
source: PMRD, original name: ghr-miR398
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGGGTGCCACCTAAGAACACAGG mismatches: 1 bulges: 2 |
pre-miRNA
GAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
((((((((..((((.((((((((((..((...........))..)))))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
((((((((..((((.((((((((((..((...........))..)))))))))).))))))))))))
SIMILARITIES| miRBase gra-MIR398: 2e-32 PMRD vvi-miR398a: 0.00001 microPC miR398: 2e-32 | UniProt no hits RFAM MIR398: 0.00005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
