ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR399
source: PMRD, original name: ghr-miR399b
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GGGCAACTCTCCTTAAGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
CAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTG
dot-bracket secondary structure
((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
CAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTG
dot-bracket secondary structure
((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))
SIMILARITIES| miRBase ghr-MIR399d: 2e-38 PMRD mtr-miR399c: 0.000003 microPC miR399: 2e-38 | UniProt no hits RFAM mir-399: 0.000000001 |
Identical with: miR399 from microPC (MNEST045684) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
