ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR408
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCACTGCGTCTTCCCTGGA miRNA* CGAGGACGGAGGAGCGGCGCCA mismatches: 5 bulges: 3 |
pre-miRNA
AGGCACTGCGTCTTCCCTGGATTCTGGTGGTGTTCCATCAGAAGGGCCGAGGACGGAGGAGCGGCGCCA
dot-bracket secondary structure
.(((.((((..(((((((((.(((((((((....)))))))))...)).)))..))))..)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGCACTGCGTCTTCCCTGGATTCTGGTGGTGTTCCATCAGAAGGGCCGAGGACGGAGGAGCGGCGCCA
dot-bracket secondary structure
.(((.((((..(((((((((.(((((((((....)))))))))...)).)))..))))..)))).))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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