ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR414b
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCTTCATCATCATCGTCAT miRNA* TCGGTGGTTTCATGGAGTGAAG mismatches: 3 bulges: 3 |
pre-miRNA
TTTTCTTCATCATCATCGTCATCAAATGTTACTCCTCAGCCGAAGGAAGGGCTTAACGAGGTTGGTCCGCCGCCGTTCTTGACTAAAACTTTTGATATGG
TGGAAGACCCTTCGACTGATTCGGTGGTTTCATGGAGTGAAG
dot-bracket secondary structure
(((.((((((.(((((((..((((...(((..(((((....).))))..)))....(((((..((((..(((((((((..((.......))..)).))))
)))..)))))))))..)))).)))))))...)))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TTTTCTTCATCATCATCGTCATCAAATGTTACTCCTCAGCCGAAGGAAGGGCTTAACGAGGTTGGTCCGCCGCCGTTCTTGACTAAAACTTTTGATATGG
TGGAAGACCCTTCGACTGATTCGGTGGTTTCATGGAGTGAAG
dot-bracket secondary structure
(((.((((((.(((((((..((((...(((..(((((....).))))..)))....(((((..((((..(((((((((..((.......))..)).))))
)))..)))))))))..)))).)))))))...)))))).))).
SIMILARITIES| miRBase ath-MIR414: 0.0001 PMRD ath-miR414: 0.0001 microPC no hits | UniProt sp|O80982|HSFA2_ARATH: 0.00000000002 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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