ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR414c
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCT miRNA* ATGATGAGTTTGACG mismatches: 3 bulges: 0 |
pre-miRNA
GGATGATGAGTTTGACGTAGATCTGGAGGAAATAATGTCATGGGAAGCAATTTGGCAGTCAATTCAGGAGAACAGCAGACACAGAAAGTCTAACAATGGA
GATGCTGCTTCTTCGGTACATGTTTCGGTGATCGCTATGTCTGACCAGCTAGGGCCACAGTGGCCCGTTCATCATCATCGTCATCATCATCATCT
dot-bracket secondary structure
(((((((((...(((((..(((((((.(((.(((.((((((.((((((......))..........(((((((((((....((.............))..
..))))).))))))........)))).)))).)).))).)))..))))...(((((.....))))).......)))..)))))...)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GGATGATGAGTTTGACGTAGATCTGGAGGAAATAATGTCATGGGAAGCAATTTGGCAGTCAATTCAGGAGAACAGCAGACACAGAAAGTCTAACAATGGA
GATGCTGCTTCTTCGGTACATGTTTCGGTGATCGCTATGTCTGACCAGCTAGGGCCACAGTGGCCCGTTCATCATCATCGTCATCATCATCATCT
dot-bracket secondary structure
(((((((((...(((((..(((((((.(((.(((.((((((.((((((......))..........(((((((((((....((.............))..
..))))).))))))........)))).)))).)).))).)))..))))...(((((.....))))).......)))..)))))...)))))))))
SIMILARITIES| miRBase no hits PMRD ghr-miR414d: 3e-67 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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