miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST048520
species: Gossypium hirsutum
miRNA family: MIR414
source: PMRD, original name: ghr-miR414d

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCGTCATCATCATCATCT

miRNA*
ATGATGAGTTTCACGTAGATC

mismatches: 8
bulges: 0

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pre-miRNA
GATGATGAGTTTCACGTAGATCTGGAGGAAATAATGGTCATCGAAGCAATTTGGCAGTCAATTCAGGAGAACAGCAGACACAGAAAGTCTAACAATGGAG
ATGCTGCTTCTTCGGTACATGTTTCGGTAGATCGCTATGTCTCACCAGCTATGGCCACAGTGGCCGTTCATCATCATCGTCATCATCATCATCT


dot-bracket secondary structure
((((((((.....(((..(((((((.(((.(((.((((((((((((((..(((.....)))....(((((((((((....((.............))...
.))))).))))))......))))))))).))))).))).)))..))))..((((((.....)))))).....)))..))).....)))))))).



SIMILARITIES
miRBase no hits

PMRD ghr-miR414c: 3e-67

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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