ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR414
source: PMRD, original name: ghr-miR414d
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCGTCATCATCATCATCT miRNA* ATGATGAGTTTCACGTAGATC mismatches: 8 bulges: 0 |
pre-miRNA
GATGATGAGTTTCACGTAGATCTGGAGGAAATAATGGTCATCGAAGCAATTTGGCAGTCAATTCAGGAGAACAGCAGACACAGAAAGTCTAACAATGGAG
ATGCTGCTTCTTCGGTACATGTTTCGGTAGATCGCTATGTCTCACCAGCTATGGCCACAGTGGCCGTTCATCATCATCGTCATCATCATCATCT
dot-bracket secondary structure
((((((((.....(((..(((((((.(((.(((.((((((((((((((..(((.....)))....(((((((((((....((.............))...
.))))).))))))......))))))))).))))).))).)))..))))..((((((.....)))))).....)))..))).....)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGATGAGTTTCACGTAGATCTGGAGGAAATAATGGTCATCGAAGCAATTTGGCAGTCAATTCAGGAGAACAGCAGACACAGAAAGTCTAACAATGGAG
ATGCTGCTTCTTCGGTACATGTTTCGGTAGATCGCTATGTCTCACCAGCTATGGCCACAGTGGCCGTTCATCATCATCGTCATCATCATCATCT
dot-bracket secondary structure
((((((((.....(((..(((((((.(((.(((.((((((((((((((..(((.....)))....(((((((((((....((.............))...
.))))).))))))......))))))))).))))).))).)))..))))..((((((.....)))))).....)))..))).....)))))))).
SIMILARITIES| miRBase no hits PMRD ghr-miR414c: 3e-67 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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