ABOUT THIS RECORDspecies: Gossypium hirsutum
source: PMRD, original name: ghr-miR482c
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTACTCCTCCCAATCC miRNA* TGGTTTTACTGAAAGCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCA mismatches: 7 bulges: 117 |
pre-miRNA
TCTACTCCTCCCAATCCGCTGAGATGGAGAATGTATGCGGCCAGGTAAGATAGAAATGCCATCCGTCTGCATTCACAGAGGGGCGATGGTTTTACTGAAA
GCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCACCTCTTGAAGGGAAGAAAAAGATGGTTAACATGGAGGCAACAACAGGATC
TGTGATATGGGGTGA
dot-bracket secondary structure
..((((((..(((...((((....((..(((((((.((((...((((.........))))..)))).))))))).))....)))).))).....(((...
(.(((((..(((((..((..(((((....)))))..))..(((((.....))))))))))...........(((.....)))..))))).)..)))....
........)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TCTACTCCTCCCAATCCGCTGAGATGGAGAATGTATGCGGCCAGGTAAGATAGAAATGCCATCCGTCTGCATTCACAGAGGGGCGATGGTTTTACTGAAA
GCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCACCTCTTGAAGGGAAGAAAAAGATGGTTAACATGGAGGCAACAACAGGATC
TGTGATATGGGGTGA
dot-bracket secondary structure
..((((((..(((...((((....((..(((((((.((((...((((.........))))..)))).))))))).))....)))).))).....(((...
(.(((((..(((((..((..(((((....)))))..))..(((((.....))))))))))...........(((.....)))..))))).)..)))....
........)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
