ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1508
source: PMRD, original name: gma-miR1508b
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAAAGGGGAATAGCAGTTG miRNA* ACTGCTATTCCCATTTCTAAA mismatches: 1 bulges: 0 |
pre-miRNA
AATTGCTATTCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGGAATAGCAGTTGAGTGGTGCTT
dot-bracket secondary structure
....((((((((((((((((((((.((((((.((((((.....((((...))))..))).))).)))))).))))))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
AATTGCTATTCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGGAATAGCAGTTGAGTGGTGCTT
dot-bracket secondary structure
....((((((((((((((((((((.((((((.((((((.....((((...))))..))).))).)))))).))))))))))))))))))))....
SIMILARITIES| miRBase gma-MIR1508b: 5e-49 PMRD gma-miR1508a: 3e-44 microPC miR1508: 4e-37 | UniProt no hits RFAM no hits |
Identical with: gma-MIR1508b from miRBase (MNEST040486) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
