ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1515
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTTTGCGTGCAATGATCTG miRNA* GATCACTCACGCAAAATGATG mismatches: 3 bulges: 1 |
pre-miRNA
TAAATGTTCATCATTTTGCGTGCAATGATCTGAACCATTTTGATTCCCTGCACCGTTATTTCGTTGTGGCATAATCAAATTAAGCCATTGATTTTATGTT
TGTGGAAAACGTTTCTGATCACTCACGCAAAATGATGTCAATTTT
dot-bracket secondary structure
.((((...((((((((((((((...(((((.(((.(..(((((((..(..((.((......)).))..)...))))))).....((((.(((.....)))
.)))).....).))).)))))..))))))))))))))...)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TAAATGTTCATCATTTTGCGTGCAATGATCTGAACCATTTTGATTCCCTGCACCGTTATTTCGTTGTGGCATAATCAAATTAAGCCATTGATTTTATGTT
TGTGGAAAACGTTTCTGATCACTCACGCAAAATGATGTCAATTTT
dot-bracket secondary structure
.((((...((((((((((((((...(((((.(((.(..(((((((..(..((.((......)).))..)...))))))).....((((.(((.....)))
.)))).....).))).)))))..))))))))))))))...)))).
SIMILARITIES| miRBase gma-MIR1515: 1e-78 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1515 from miRBase (MNEST040497) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
