ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1519
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTGTTGCAAAATAGTCATT miRNA* AGACTATTTTGCAATACTTATG mismatches: 3 bulges: 0 |
pre-miRNA
TATCTTTACATAAGTGTTGCAAAATAGTCATTCCGTTAAATTTTAAAGTAACACCGTTAGTGAGATCAATTTTAGTGCCACGTGAACTATCCAATATAGC
ACTAAAGGATGACGTGACATGACATGTGGACGTGTCTCCTAAAAGATGTCACGTCATTTTGAAAGTCCACGAGACATTTCACAACCTTTGCAATGCATGG
ACACTTTAAGCACGATTTCTGACATCTTTTAAGTTAGAGACTATTTTGCAATACTTATGCAAAAGAT
dot-bracket secondary structure
.((((((.(((((((((((((((((((((....(((.....((((((((..........((((((((((.((((((((....((.......)).....))
)))))).(((((((((((((((((((....)))))).........)))))))))))))))))..(((.....))).))))))..((..(((...))).))
..)))))))).)))...((((((.........)))))))))))))))))))))))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TATCTTTACATAAGTGTTGCAAAATAGTCATTCCGTTAAATTTTAAAGTAACACCGTTAGTGAGATCAATTTTAGTGCCACGTGAACTATCCAATATAGC
ACTAAAGGATGACGTGACATGACATGTGGACGTGTCTCCTAAAAGATGTCACGTCATTTTGAAAGTCCACGAGACATTTCACAACCTTTGCAATGCATGG
ACACTTTAAGCACGATTTCTGACATCTTTTAAGTTAGAGACTATTTTGCAATACTTATGCAAAAGAT
dot-bracket secondary structure
.((((((.(((((((((((((((((((((....(((.....((((((((..........((((((((((.((((((((....((.......)).....))
)))))).(((((((((((((((((((....)))))).........)))))))))))))))))..(((.....))).))))))..((..(((...))).))
..)))))))).)))...((((((.........)))))))))))))))))))))))))))..))))))
SIMILARITIES| miRBase gma-MIR1519: 3e-151 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1519 from miRBase (MNEST040501) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
