ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: PMRD, original name: gma-miR1520a
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAACATGATACATGACAGTCA miRNA* ACTGTTGTGTCATGTTCTGAT mismatches: 0 bulges: 2 |
pre-miRNA
AAAGGAATGTTGACCGTCATGTGTCATGTTCTTATTGGATGATGACTGTTGTGTCATGTTCTGATTGGTCAATGAAAATAACAATGCATTTCATCTTTTA
TGGAGTTGACATCCAATTAGAACATGATACATGACAGTCATCATCCAATA
dot-bracket secondary structure
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...)))
)...)))))...)))))))))))))))))))..)))))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AAAGGAATGTTGACCGTCATGTGTCATGTTCTTATTGGATGATGACTGTTGTGTCATGTTCTGATTGGTCAATGAAAATAACAATGCATTTCATCTTTTA
TGGAGTTGACATCCAATTAGAACATGATACATGACAGTCATCATCCAATA
dot-bracket secondary structure
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...)))
)...)))))...)))))))))))))))))))..)))))))))))))))).
SIMILARITIES| miRBase gma-MIR1520a: 1e-81 PMRD gma-miR1520c: 4e-23 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1520a from miRBase (MNEST040502) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
