ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: PMRD, original name: gma-miR1520b
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGACAGTCATCATTTAATAAGA miRNA* TTATTGAATGATGACTATTACGT mismatches: 1 bulges: 0 |
pre-miRNA
CGTGTCACGTTCTTATTGAATGATGACTATTACGTGTCATGTTCTGATCGACCAATGACAACAACAATAATTCGACATCCAATCAGAACATGACACGTGA
CAGTCATCATTTAATAAGAACGTGACATA
dot-bracket secondary structure
.(((((((((((((((((((((((((((.((((((((((((((((((((((....((.......)).....)))).......))))))))))))))))))
.))))))))))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
CGTGTCACGTTCTTATTGAATGATGACTATTACGTGTCATGTTCTGATCGACCAATGACAACAACAATAATTCGACATCCAATCAGAACATGACACGTGA
CAGTCATCATTTAATAAGAACGTGACATA
dot-bracket secondary structure
.(((((((((((((((((((((((((((.((((((((((((((((((((((....((.......)).....)))).......))))))))))))))))))
.))))))))))))))))))))))))))).
SIMILARITIES| miRBase gma-MIR1520b: 3e-69 PMRD gma-miR1520c: 0.000000000000007 microPC miR1520: 0.0001 | UniProt no hits RFAM no hits |
Identical with: gma-MIR1520b from miRBase (MNEST040503) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
