ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: PMRD, original name: gma-miR1520c
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAATAAGAACGTGACACGTGA miRNA* ACGTGTCATATTCTGATTGATCA mismatches: 4 bulges: 0 |
pre-miRNA
ATGATGACTGTCACGTGTCATATTCTGATTGATCAATAAAAATAATAATACATTTTATTTTTTATGGAGTTGACATCCAATCAGAACATGACACATGACA
AACATCATTCAATAAGAACGTGACACGTGACAGTTAACAT
dot-bracket secondary structure
(((.((((((((((((((((..((((.(((((.....((((((((.........))))))))..((((.......)))).......((((...))))...
........))))).))))..)))))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
ATGATGACTGTCACGTGTCATATTCTGATTGATCAATAAAAATAATAATACATTTTATTTTTTATGGAGTTGACATCCAATCAGAACATGACACATGACA
AACATCATTCAATAAGAACGTGACACGTGACAGTTAACAT
dot-bracket secondary structure
(((.((((((((((((((((..((((.(((((.....((((((((.........))))))))..((((.......)))).......((((...))))...
........))))).))))..)))))))))))))))).)))
SIMILARITIES| miRBase gma-MIR1520c: 1e-75 PMRD gma-miR1520a: 3e-23 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1520c from miRBase (MNEST040504) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
