ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1521
source: PMRD, original name: gma-miR1521
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTAATGGAAAATGTTGA miRNA* AACGTTACCCATTAACAGTC mismatches: 2 bulges: 0 |
pre-miRNA
TACTCATTGACTGTTAATGGAAAATGTTGACTGCCAAATGTCATAATCCTATTGGATGTTAAAATTGTATACGAAAATTCACGTCCAATATGATTATGAC
ATATGACAGTTAACGTTACCCATTAACAGTCAACGTCCAATAAAATTGTGACACATAACAGTCAACATTATTCAATAACAATTAATGTTC
dot-bracket secondary structure
......((((((((((((((..(((((((((((.((.(((((((((((.((((((((((.((..(((....)))...)).)))))))))).)))))))))
)).)).)))))))))))..)))))))))))))).(((((((...)))).)))...........(((((((............))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TACTCATTGACTGTTAATGGAAAATGTTGACTGCCAAATGTCATAATCCTATTGGATGTTAAAATTGTATACGAAAATTCACGTCCAATATGATTATGAC
ATATGACAGTTAACGTTACCCATTAACAGTCAACGTCCAATAAAATTGTGACACATAACAGTCAACATTATTCAATAACAATTAATGTTC
dot-bracket secondary structure
......((((((((((((((..(((((((((((.((.(((((((((((.((((((((((.((..(((....)))...)).)))))))))).)))))))))
)).)).)))))))))))..)))))))))))))).(((((((...)))).)))...........(((((((............))))))).
SIMILARITIES| miRBase gma-MIR1521: 2e-105 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1521 from miRBase (MNEST040520) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
