ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1530
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCACATAAATTAAAATAT miRNA* ATAAGTTTTATGTGAAAATA mismatches: 4 bulges: 1 |
pre-miRNA
GCAAAATATAATATTAATATAAGTTTTATGTGAAAATAATTTAATTTTTTTTAATTTATTATATTTTTATAATTTTATATATTATCTTTTAAAATATAAT
ATATAAGATTAAATTCTATTTTCACATAAATTAAAATATGTATGTTTAT
dot-bracket secondary structure
...(((((((......((((....((((((((((((((..((((......))))...............((((((((((((((((.((....)).)))))
))))))))))).....)))))))))))))).....)))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GCAAAATATAATATTAATATAAGTTTTATGTGAAAATAATTTAATTTTTTTTAATTTATTATATTTTTATAATTTTATATATTATCTTTTAAAATATAAT
ATATAAGATTAAATTCTATTTTCACATAAATTAAAATATGTATGTTTAT
dot-bracket secondary structure
...(((((((......((((....((((((((((((((..((((......))))...............((((((((((((((((.((....)).)))))
))))))))))).....)))))))))))))).....)))).)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
