ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1532
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACACGCTAAGCGAGAGGAGCTC miRNA* mismatches: 3 bulges: 139 |
pre-miRNA
TCAACTCATTCTCTCGCGTAGCGTGTAGCGCGTGCTAAACGAGACGTTAAGCACGAGAGTCAGAATCCGTTACTCGCGCACAGCGCACAGCACAGACTAA
GTGGACAAAACTGACACAGAACACGCTAAGCGAGAGGAGCTCGCTAAGCACA
dot-bracket secondary structure
........(((((((((.((((((((....((((((.((((...)))).))))))...(((((............((((...))))....(((.......
))).......))))).....)))))))).)))))))))(((.....)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TCAACTCATTCTCTCGCGTAGCGTGTAGCGCGTGCTAAACGAGACGTTAAGCACGAGAGTCAGAATCCGTTACTCGCGCACAGCGCACAGCACAGACTAA
GTGGACAAAACTGACACAGAACACGCTAAGCGAGAGGAGCTCGCTAAGCACA
dot-bracket secondary structure
........(((((((((.((((((((....((((((.((((...)))).))))))...(((((............((((...))))....(((.......
))).......))))).....)))))))).)))))))))(((.....)))...
SIMILARITIES| miRBase gma-MIR1532: 8e-83 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR1532 from miRBase (MNEST040531) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
