ABOUT THIS RECORDspecies: Glycine max
source: PMRD, original name: gma-miR1533
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAATAAAAATAATAATGA miRNA* TTATTATTATTATTGTCA mismatches: 2 bulges: 0 |
pre-miRNA
TGTAAATTATTCATATGTTATTATTATTATTGTCACTATCATCATCACCTTTATTACTATCACCATCACCATCATTGTCTCTATCAATGATAGTGGCCAT
GATCAATAATGATAATAAAAATAATAATGATACTAATGGT
dot-bracket secondary structure
.....((((((..((((((((((((.(((((((((...............(((((...((((...((((.(((((((.......))))))).))))...)
))).)))))))))))))).))))))))).)))..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TGTAAATTATTCATATGTTATTATTATTATTGTCACTATCATCATCACCTTTATTACTATCACCATCACCATCATTGTCTCTATCAATGATAGTGGCCAT
GATCAATAATGATAATAAAAATAATAATGATACTAATGGT
dot-bracket secondary structure
.....((((((..((((((((((((.(((((((((...............(((((...((((...((((.(((((((.......))))))).))))...)
))).)))))))))))))).))))))))).)))..))))))
SIMILARITIES| miRBase gma-MIR1533: 2e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0005 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
