ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR2108
source: PMRD, original name: gma-miR2108a
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAATGTGTTGTGTTTGTCGG miRNA* GATTACATTTTTGTTAAG mismatches: 4 bulges: 3 |
pre-miRNA
CTGTGTTTTAATGTGTTGTGTTTGTCGGAACCCCTGATTACATTTTTGTTAAGCGCAG
dot-bracket secondary structure
((((((((.((((....((((..(((((.....))))).))))...))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
CTGTGTTTTAATGTGTTGTGTTTGTCGGAACCCCTGATTACATTTTTGTTAAGCGCAG
dot-bracket secondary structure
((((((((.((((....((((..(((((.....))))).))))...))))))))))))
SIMILARITIES| miRBase gma-MIR2108a: 3e-27 PMRD gma-miR2108b: 5e-20 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR2108a from miRBase (MNEST040537) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
