ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR2109
source: PMRD, original name: gma-miR2109
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGAGTGTCTTCGCCTCTG miRNA* GAGGCGTAGATACTCACACC mismatches: 2 bulges: 0 |
pre-miRNA
GGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACC
dot-bracket secondary structure
((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACC
dot-bracket secondary structure
((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))
SIMILARITIES| miRBase gso-MIR2109: 7e-35 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gso-MIR2109 from miRBase (MNEST040641) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
