ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR2119
source: PMRD, original name: gma-miR2119
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAAGGAGTTGTAGGGGAA miRNA* ATTTCCTCTATACTCACTTTTATT mismatches: 1 bulges: 6 |
pre-miRNA
TCATTTTTTATACTTTAATTTCCTCTATACTCACTTTTATTGGAGAAAAAAGAGAATAGAAAATAGTGGATTTCTCTTCTTTTTTTCAATCAAAGGAGTT
GTAGGGGAAAAGTTTAGAAAATGG
dot-bracket secondary structure
.(((((((((.(((((....((((((((((((.((((.((((((((((((((((((...............))))))).))))))))))).))))))).)
))))))))))))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
TCATTTTTTATACTTTAATTTCCTCTATACTCACTTTTATTGGAGAAAAAAGAGAATAGAAAATAGTGGATTTCTCTTCTTTTTTTCAATCAAAGGAGTT
GTAGGGGAAAAGTTTAGAAAATGG
dot-bracket secondary structure
.(((((((((.(((((....((((((((((((.((((.((((((((((((((((((...............))))))).))))))))))).))))))).)
))))))))))))).))))))))).
SIMILARITIES| miRBase gma-MIR2119: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
