ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR169
source: PMRD, original name: gso-miR169a
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGGCCTTGGCTA mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGG
CTA
dot-bracket secondary structure
.((((((((..((((((((((((..(((.......(((((..((((((((((((....))))))))))))))))))))..))))))))))))..))))))
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGG
CTA
dot-bracket secondary structure
.((((((((..((((((((((((..(((.......(((((..((((((((((((....))))))))))))))))))))..))))))))))))..))))))
)).
SIMILARITIES| miRBase zma-MIR169p: 0.0000003 PMRD gma-miR169p: 1e-18 microPC miR169: 1e-18 | UniProt no hits RFAM MIR169_2: 0.0000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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