ABOUT THIS RECORDspecies: Hordeum vulgare subsp. Vulgare
miRNA family: MIR172
source: PMRD, original name: hvv-miR172c
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GCTTGACGA mismatches: 17 bulges: 0 |
pre-miRNA
TGGTGGTGGTGTTGGTTGCTTGACGACGATGATGGAGCCATCGGGTCGAACCGGAATGAGGCCGATGGGGCGGCGGGGGCAGCTGCCGCGGCTGTTTTGG
AGAATCCTGATGATGCTGCAGCGGACGATGACCACCA
dot-bracket secondary structure
.((((((.(((((.(((((....((((..(((((....))))).))))..(((((((..(((((....((((((.......)))))).))))))))))))
.................))))).))).)).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGGTGGTGGTGTTGGTTGCTTGACGACGATGATGGAGCCATCGGGTCGAACCGGAATGAGGCCGATGGGGCGGCGGGGGCAGCTGCCGCGGCTGTTTTGG
AGAATCCTGATGATGCTGCAGCGGACGATGACCACCA
dot-bracket secondary structure
.((((((.(((((.(((((....((((..(((((....))))).))))..(((((((..(((((....((((((.......)))))).))))))))))))
.................))))).))).)).)))))).
SIMILARITIES| miRBase bdi-MIR172d: 5e-25 PMRD hvv-miR172d: 2e-64 microPC miR172: 0.0001 | UniProt no hits RFAM mir-172: 0.0001 |
Identical with: hvv-miR172b from PMRD (MNEST048665) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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