ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR167
source: PMRD, original name: ini-miR167
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCTCTTGTGCGCACCGGTATTTA mismatches: 7 bulges: 5 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGGTAAGATAGAACAAAATCTTGGGTTTTCTTTTTCCCACTTTTTCTTTTATGGGGTTTTCATCTTTCTGCAGAAATAGAA
TTCACTGTACCAAAAGAACACATCTTTGGGGTTTTTTTCTGTTCTTCATTCTCCCCCCTTCTGTTTCAATTCTTTTTTTTGGTTGGTTGGTATGGGTTCT
GTACATAGTTTAAAGATTGGAGAGTGAATTATGCCTAAAGTAGACAGATCTCTTGTGCGCACCGGTATTTA
dot-bracket secondary structure
....((((...((((((((((....(((((((.(((((((..(((.((((((((((((............)))))............(((((........
....)))))..))))))).))....)..))))))).))))))).((((((((((.(((..(((..((((((.........)))))).)))...))).(((
.............)))..))))))))))................))))))....))))....)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGAAGCTGCCAGCATGATCTGGTAAGATAGAACAAAATCTTGGGTTTTCTTTTTCCCACTTTTTCTTTTATGGGGTTTTCATCTTTCTGCAGAAATAGAA
TTCACTGTACCAAAAGAACACATCTTTGGGGTTTTTTTCTGTTCTTCATTCTCCCCCCTTCTGTTTCAATTCTTTTTTTTGGTTGGTTGGTATGGGTTCT
GTACATAGTTTAAAGATTGGAGAGTGAATTATGCCTAAAGTAGACAGATCTCTTGTGCGCACCGGTATTTA
dot-bracket secondary structure
....((((...((((((((((....(((((((.(((((((..(((.((((((((((((............)))))............(((((........
....)))))..))))))).))....)..))))))).))))))).((((((((((.(((..(((..((((((.........)))))).)))...))).(((
.............)))..))))))))))................))))))....))))....)))).....
SIMILARITIES| miRBase csi-MIR167c: 0.0000009 PMRD pts-miR167: 0.0000009 microPC miR167: 0.00001 | UniProt no hits RFAM MIR167_1: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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