ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR162
source: PMRD, original name: lsa-miR162
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GTGTGTGGATATTCGA mismatches: 7 bulges: 3 |
pre-miRNA
TCGATAAACCTCTGCATCCAGCGCTCACCACCACTCCCTGTTCCGTTTCTGTTTACTGTATGTGTGTGTTACTGTGTGTGGATATTCGA
dot-bracket secondary structure
((((......((..((..(((....((((((.((.......................))..))).)))...)))..))..))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
TCGATAAACCTCTGCATCCAGCGCTCACCACCACTCCCTGTTCCGTTTCTGTTTACTGTATGTGTGTGTTACTGTGTGTGGATATTCGA
dot-bracket secondary structure
((((......((..((..(((....((((((.((.......................))..))).)))...)))..))..))...))))
SIMILARITIES| miRBase csi-MIR162: 0.000000004 PMRD gma-miR162m: 0.000000004 microPC miR162: 0.00007 | UniProt no hits RFAM MIR162_2: 0.0003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
