miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST048693
species: Manihot esculenta
miRNA family: MIR172
source: PMRD, original name: mes-miR172

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 GCGTCACCATCAAGATTCACA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGT
TTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATAT

dot-bracket secondary structure
....((.((((((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((.
..))))))..)))...))))))))))).)).)))))).))......


SIMILARITIES
miRBase bdi-MIR172a: 0.0000000005

PMRD vvi-miR172a: 0.0000000005

microPC miR172: 2e-68		UniProt no hits

RFAM mir-172: 0.000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;