ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: PMRD, original name: mtr-miR165
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGGTGTCTGATTCGAGA mismatches: 2 bulges: 0 |
pre-miRNA
GGGGAATGGTGTCTGATTCGAGACCATTCGTCACAAGTAAACAGTAGCCTTGAGAATGATCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((.(((((.(((((((.(((((....((((...........)))).))))).))))))).))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGGTGTCTGATTCGAGACCATTCGTCACAAGTAAACAGTAGCCTTGAGAATGATCTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
(((((((((.(((((.(((((((.(((((....((((...........)))).))))).))))))).))))).)))))))))
SIMILARITIES| miRBase mtr-MIR166h: 2e-41 PMRD vvi-miR166h: 0.000000001 microPC miR166: 0.00000002 | UniProt no hits RFAM mir-166: 4e-40 |
Identical with: mtr-MIR166h from miRBase (MNEST040675) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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