ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: PMRD, original name: mtr-miR166b
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGGCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GGGGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..))))))))
SIMILARITIES| miRBase mtr-MIR166e: 1e-49 PMRD gma-miR166o: 0.000000000001 microPC miR166: 1e-49 | UniProt no hits RFAM mir-166: 2e-48 |
Identical with: miR166 from microPC (MNEST046081) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
