ABOUT THIS RECORDspecies: Medicago truncatula
source: PMRD, original name: mtr-miR235c
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAATGTGTTGTGTTTGTCTC miRNA* GGTCACACAAAAACATTCT mismatches: 5 bulges: 2 |
pre-miRNA
TCAATGTGTTGTGTTTGTCTCTTTAGTATACTAAAAAATGAGGTCACACAAAAACATTCT
dot-bracket secondary structure
..(((((.((((((...(((((((((....)))))....))))..))))))..)))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TCAATGTGTTGTGTTTGTCTCTTTAGTATACTAAAAAATGAGGTCACACAAAAACATTCT
dot-bracket secondary structure
..(((((.((((((...(((((((((....)))))....))))..))))))..)))))..
SIMILARITIES| miRBase no hits PMRD mtr-miR235b: 2e-28 microPC no hits | UniProt no hits RFAM no hits |
Identical with: mtr-miR235b from PMRD (MNEST048726) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
