ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: PMRD, original name: mtr-miR399c
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GGGAAAATCTCTTTTGGCAGA mismatches: 1 bulges: 0 |
pre-miRNA
GTTCTGCTGTTGAGGAATGATAGGGAAAATCTCTTTTGGCAGAGAGGAGTAAAAATCTTAAACAGGAATGTTTCTGGTTTGCCAAAGGAGATTTGCCCTG
CCATTTTTGACAGCTATTG
dot-bracket secondary structure
.....(((((..((.((((.(((((.(((((((((((((((((..((((......((((....))))....))))..))))))))))))))))).)))))
.))))))..))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GTTCTGCTGTTGAGGAATGATAGGGAAAATCTCTTTTGGCAGAGAGGAGTAAAAATCTTAAACAGGAATGTTTCTGGTTTGCCAAAGGAGATTTGCCCTG
CCATTTTTGACAGCTATTG
dot-bracket secondary structure
.....(((((..((.((((.(((((.(((((((((((((((((..((((......((((....))))....))))..))))))))))))))))).)))))
.))))))..))))).....
SIMILARITIES| miRBase mtr-MIR399c: 3e-63 PMRD ptc-miRf10982-akr: 0.00000002 microPC miR399: 0.000006 | UniProt no hits RFAM mir-399: 1e-50 |
Identical with: mtr-MIR399c from miRBase (MNEST040733) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
