ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: PMRD, original name: mtr-miR399f
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGAAGATTTGCCCCG miRNA* GGGCAATGACTTTTTTGGCAGT mismatches: 4 bulges: 1 |
pre-miRNA
GGGCAATGACTTTTTTGGCAGTAGTTCACTTGATCTTTCAGATGATGCAAACAAACTCACTGCCAAAGAAGATTTGCCCCG
dot-bracket secondary structure
((((((...(((((((((((((((((...((((((........))).)))...)))).)))))))))))))..))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GGGCAATGACTTTTTTGGCAGTAGTTCACTTGATCTTTCAGATGATGCAAACAAACTCACTGCCAAAGAAGATTTGCCCCG
dot-bracket secondary structure
((((((...(((((((((((((((((...((((((........))).)))...)))).)))))))))))))..))))))..
SIMILARITIES| miRBase mtr-MIR399j: 3e-31 PMRD mtr-miR399i: 3e-31 microPC no hits | UniProt no hits RFAM mir-399: 6e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
