ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: PMRD, original name: mtr-miR399i
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCAAAGAAGATTTGCCCCG miRNA* GGGCAATGACTTCTTTGGCAGT mismatches: 5 bulges: 1 |
pre-miRNA
CTGGGCAATGACTTCTTTGGCAGTAGTTGACTTGATCATTCAGATGATGCAAACAAACTCACCGCCAAAGAAGATTTGCCCCG
dot-bracket secondary structure
..((((((...((((((((((.((((((...((((((((....))))).)))...)))).)).))))))))))..))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
CTGGGCAATGACTTCTTTGGCAGTAGTTGACTTGATCATTCAGATGATGCAAACAAACTCACCGCCAAAGAAGATTTGCCCCG
dot-bracket secondary structure
..((((((...((((((((((.((((((...((((((((....))))).)))...)))).)).))))))))))..))))))..
SIMILARITIES| miRBase mtr-MIR399j: 6e-42 PMRD mtr-miR399f: 3e-31 microPC no hits | UniProt no hits RFAM mir-399: 1e-40 |
Identical with: mtr-MIR399j from miRBase (MNEST040740) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
