ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: PMRD, original name: mtr-miR399j
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGAAGATTTGCCCTG miRNA* GGGGAAATCTCTTTTGGCAGA mismatches: 3 bulges: 0 |
pre-miRNA
TAGGGGAAATCTCTTTTGGCAGAGAGGAGTAGCTAGAGAGCTTGAACATGCTTGCTTCTAGTTTGCCAAAGAAGATTTGCCCTG
dot-bracket secondary structure
(((((.((((((..(((((((((.(((((((((................)).)))))))..)))))))))..)))))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TAGGGGAAATCTCTTTTGGCAGAGAGGAGTAGCTAGAGAGCTTGAACATGCTTGCTTCTAGTTTGCCAAAGAAGATTTGCCCTG
dot-bracket secondary structure
(((((.((((((..(((((((((.(((((((((................)).)))))))..)))))))))..)))))).)))))
SIMILARITIES| miRBase mtr-MIR399k: 2e-42 PMRD mtr-miR399c: 0.00000002 microPC miR399: 0.001 | UniProt no hits RFAM mir-399: 3e-41 |
Identical with: mtr-MIR399k from miRBase (MNEST040741) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
