ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2119
source: PMRD, original name: mtr-miR2119
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAAGGGAGGTGTGGAGTAG miRNA* ACTCCCTACTTTCCTTTGATT mismatches: 2 bulges: 0 |
pre-miRNA
TTTATTTTTTTTACACTAAGATACTCCCTACTTTCCTTTGATTGGAAATAAAGAGAGACAAAAAGGTAAATTTAATTTCTCTTCTTATGTCAATCAAAGG
GAGGTGTGGAGTAGGGTGTAAAAAGTAAA
dot-bracket secondary structure
......(((((((((((....((((((.(((((((((((((((((..((((..(((((...(((......)))....)))))..)))).)))))))))))
)))))).)))))).)))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
[3] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
TTTATTTTTTTTACACTAAGATACTCCCTACTTTCCTTTGATTGGAAATAAAGAGAGACAAAAAGGTAAATTTAATTTCTCTTCTTATGTCAATCAAAGG
GAGGTGTGGAGTAGGGTGTAAAAAGTAAA
dot-bracket secondary structure
......(((((((((((....((((((.(((((((((((((((((..((((..(((((...(((......)))....)))))..)))).)))))))))))
)))))).)))))).)))))))))))....
SIMILARITIES| miRBase mtr-MIR2119: 5e-62 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
[3] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
