ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR157
source: PMRD, original name: nta-miR157
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCCGTCAT mismatches: 2 bulges: 1 |
pre-miRNA
TTTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCCGTCAT
dot-bracket secondary structure
).((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))
...))))))))))))))))).)))).)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCCGTCAT
dot-bracket secondary structure
).((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))
...))))))))))))))))).)))).)))).
SIMILARITIES| miRBase sly-MIR156a: 7.0E-15 PMRD sly-miR156a: 7.0E-15 microPC miR157: 9.0E-70 | UniProt no hits RFAM no hits |
Identical with: miR156 from microPC (MNEST045877), miR157 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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